Welcome to the portal for large scale computing at WUR. We have free facilities for computing in the life sciences!
Harm Nijveen, Jan van Haarst en Pjotr Prins.
What is it?
The Life Science Grid is a network of computer clusters at different dutch universities maintained by SARA. The Wageningen UR node of consists of two machines (running Centos 5.8) with each 64 cores, 256 GB memory and 6 TB scratch disk.
Using the grid
Using the grid is not as easy as using your own linux server: things like creating the right software environment (libraries etc.), starting jobs, splitting up the work and collecting the output require some or a lot of work. To get an idea, have a look at this wiki.
If you want to use only the 2 local machines, still 128 cores, jobs can be submitted using PBS (qsub).
A limited number of applications is available via a web interface, the idea is not to use them via a browser but with command line tools like 'curl'.
The use of this cluster and similar clusters at other universities in the Netherlands is free for life science researchers. To get access you need a grid certificate which can be requested here (using jGridStart). Then you should become a member of the lsgrid VO (virtual organisation, see wiki), and get a user account on the local cluster.